{"id":76,"date":"2016-03-01T18:10:25","date_gmt":"2016-03-01T18:10:25","guid":{"rendered":"http:\/\/papoutsakis.org\/?page_id=76"},"modified":"2016-09-19T16:09:13","modified_gmt":"2016-09-19T16:09:13","slug":"publications","status":"publish","type":"page","link":"http:\/\/papoutsakis.org\/?page_id=76","title":{"rendered":"Recent Publications and Patents"},"content":{"rendered":"

Terry Papoutsakis Google Scholar Link<\/a><\/p>\n

Recent Publications and Patents<\/h3>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Engineering membrane and cell-wall programs for tolerance to toxic chemicals: Beyond solo genes
\n<\/a>NR Sandoval, ET Papoutsakis
\nCurrent Opinion in Microbiology 33, 56-66<\/td>\n		\u00a0<\/a><\/td>\n2016<\/span><\/td>\n<\/tr>\n
Stable and enhanced gene expression in Clostridium acetobutylicum using synthetic untranslated regions with a stem-loop
\n<\/a>J Lee, YS Jang, ET Papoutsakis, SY Lee
\nJournal of biotechnology 230, 40-43<\/td>\n		\u00a0<\/a><\/td>\n2016<\/span><\/td>\n<\/tr>\n
Megakaryocytic Maturation in Response to Shear Flow Is Mediated by the Activator Protein 1 (AP-1) Transcription Factor via Mitogen-activated Protein Kinase (MAPK) Mechanotransduction
\n<\/a>SA Luff, ET Papoutsakis
\nJournal of Biological Chemistry 291 (15), 7831-7843<\/td>\n		2<\/a><\/td>\n2016<\/span><\/td>\n<\/tr>\n
Overexpression of two stress-responsive, small, non-coding RNAs, 6S and tmRNA, imparts butanol tolerance in Clostridium acetobutylicum
\n<\/a>AJ Jones, KP Venkataramanan, T Papoutsakis
\nFEMS microbiology letters 363 (8), fnw063<\/td>\n		1<\/a><\/td>\n2016<\/span><\/td>\n<\/tr>\n
Building cellular pathways and programs enabled by the genetic diversity of allo-genomes and meta-genomes
\n<\/a>KA Zingaro, ET Papoutsakis
\nCurrent opinion in biotechnology 36, 16-31<\/td>\n		\u00a0<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Biomass accessibility analysis using electron tomography
\n<\/a>JD Hinkle, PN Ciesielski, K Gruchalla, KR Munch, BS Donohoe
\nBiotechnology for biofuels 8 (1), 1<\/td>\n		\u00a0<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Whole-genome sequence of an evolved Clostridium pasteurianum strain reveals Spo0A deficiency responsible for increased butanol production and superior growth
\n<\/a>NR Sandoval, KP Venkataramanan, TS Groth, ET Papoutsakis
\nBiotechnology for biofuels 8 (1), 1<\/td>\n		5<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
The Importance of & a Strategy for Synthetic Methylotrophy
\n<\/a>ET Papoutsakis
\n2015 SIMB Annual Meeting and Exhibition<\/td>\n		\u00a0<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Reassessing the progress in the production of advanced biofuels in the current competitive environment and beyond: what are the successes and where progress eludes us and why
\n<\/a>ET Papoutsakis
\nIndustrial & Engineering Chemistry Research 54 (42), 10170-10182<\/td>\n		5<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Synthetic methylotrophy: engineering the production of biofuels and chemicals based on the biology of aerobic methanol utilization
\n<\/a>WB Whitaker, NR Sandoval, RK Bennett, AG Fast, ET Papoutsakis
\nCurrent opinion in biotechnology 33, 165-175<\/td>\n		10<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum
\n<\/a>KP Venkataramanan, L Min, S Hou, SW Jones, MT Ralston, KH Lee, …
\nBiotechnology for biofuels 8 (1), 1<\/td>\n		6<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Editorial overview: Energy biotechnology
\n<\/a>ET Papoutsakis, JT Pronk
\nCurrent opinion in biotechnology 33, viii-xi<\/td>\n		2<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Expression of heterologous sigma factors enables functional screening of metagenomic and heterologous genomic libraries
\n<\/a>SM Gaida, NR Sandoval, SA Nicolaou, Y Chen, KP Venkataramanan…
\nNature communications 6<\/td>\n		8<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Engineering complex microbial phenotypes with transcription enhancement
\n<\/a>ET Papoutsakis, SM Gaida
\nUS Patent 9,023,618<\/td>\n		1<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
The Clostridium sporulation programs: diversity and preservation of endospore differentiation
\n<\/a>MA Al-Hinai, SW Jones, ET Papoutsakis
\nMicrobiology and Molecular Biology Reviews 79 (1), 19-37<\/td>\n		15<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Editorial overview: Biotechnology and Bioprocess Engineering: celebrating the 65th anniversary of \u2018Oxygen Transfer in Submerged Fermentations\u2019, marking the birth of modern Biochemical Engineering<\/a><\/p>\n
ET Papoutsakis, NJ Titchener-Hooker<\/div>\n
Current Opinion in Chemical Engineering, iv-vi<\/div>\n<\/td>\n
\u00a0<\/a><\/td>\n2015<\/span><\/td>\n<\/tr>\n
Capturing the response of Clostridium acetobutylicum to chemical stressors using a regulated genome-scale metabolic model
\n<\/a>S Dash, TJ Mueller, KP Venkataramanan, ET Papoutsakis, CD Maranas
\nBiotechnology for biofuels 7 (1), 1<\/td>\n		14<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Overexpression of the Lactobacillus plantarum peptidoglycan biosynthesis murA2 gene increases the tolerance of Escherichia coli to alcohols and enhances ethanol production
\n<\/a>Y Yuan, C Bi, SA Nicolaou, KA Zingaro, M Ralston, ET Papoutsakis
\nApplied microbiology and biotechnology 98 (19), 8399-8411<\/td>\n		5<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Shear enhances thrombopoiesis and formation of microparticles that induce megakaryocytic differentiation of stem cells
\n<\/a>J Jiang, DS Woulfe, ET Papoutsakis
\nBlood 124 (13), 2094-2103<\/td>\n		13<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Recombinant clostridia that fix CO2 and CO and uses thereof
\n<\/a>ET Papoutsakis, MA Al-Hinai, SW Jones, DC Indurthi, DK Mitchell, A Fast
\nUS Patent 8,759,070<\/td>\n		5<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n
Proteomic analyses of the phase transition from acidogenesis to solventogenesis using solventogenic and non-solventogenic Clostridium acetobutylicum strains
\n<\/a>YS Jang, MJ Han, J Lee, JA Im, YH Lee, ET Papoutsakis, G Bennett, …
\nApplied microbiology and biotechnology 98 (11), 5105-5115<\/td>\n		14<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Methods and compositions for generating sporulation deficient bacteria
\n<\/a>BP Tracy, CJ Paredes, ET Papoutsakis
\nUS Patent App. 14\/274,252<\/td>\n		1<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Platelets from mice lacking the aryl hydrocarbon receptor exhibit defective collagen\u2010dependent signaling
\n<\/a>S Lindsey, J Jiang, D Woulfe, ET Papoutsakis
\nJournal of Thrombosis and Haemostasis 12 (3), 383-394<\/td>\n		6<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Exploring the heterologous genomic space for building, stepwise, complex, multicomponent tolerance to toxic chemicals
\n<\/a>KA Zingaro, SA Nicolaou, Y Yuan, ET Papoutsakis
\nACS synthetic biology 3 (7), 476-486<\/td>\n		7<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
134. Experimental Systems-Biology Approaches for Clostridia-Based Bioenergy Production: The Metabolite Stress-Response System in Solventogenic Clostridia
\n<\/a>ET Papoutsakis
\n2014 Genomic Science Contractor-Grantee Meeting XII, 230<\/td>\n		\u00a0<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
\u03c3K of Clostridium acetobutylicum is the first known sporulation-specific sigma factor with two developmentally separated roles, one early and one late in sporulation
\n<\/a>MA Al-Hinai, SW Jones, ET Papoutsakis
\nJournal of bacteriology 196 (2), 287-299<\/td>\n		16<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Editorial overview: Biotechnology and bioprocess engineering
\n<\/a>ET Papoutsakis, NJ Titchener-Hooker
\nCurrent Opinion in Chemical Engineering, iv-vi<\/td>\n		\u00a0<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n
Overexpression of the peptidoglycan biosynthesis gene increases the tolerance of to alcohols and enhances ethanol production
\n<\/a>Y Yuan, C Bi, S Nicolaou, K Zingaro, M Ralston, E Papoutsakis
\nApplied Microbiology and Biotechnology 19 (98), 8399-8411<\/td>\n		\u00a0<\/a><\/td>\n2014<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Terry Papoutsakis Google Scholar Link Recent Publications and Patents Engineering membrane and cell-wall programs for tolerance to toxic chemicals: Beyond solo genes NR Sandoval, ET Papoutsakis Current Opinion in Microbiology 33, 56-66 \u00a0 2016 Stable and enhanced gene expression in Clostridium acetobutylicum using synthetic untranslated regions with a stem-loop J Lee, YS Jang, ET Papoutsakis, […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-76","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/papoutsakis.org\/index.php?rest_route=\/wp\/v2\/pages\/76","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/papoutsakis.org\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/papoutsakis.org\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/papoutsakis.org\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/papoutsakis.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=76"}],"version-history":[{"count":5,"href":"http:\/\/papoutsakis.org\/index.php?rest_route=\/wp\/v2\/pages\/76\/revisions"}],"predecessor-version":[{"id":247,"href":"http:\/\/papoutsakis.org\/index.php?rest_route=\/wp\/v2\/pages\/76\/revisions\/247"}],"wp:attachment":[{"href":"http:\/\/papoutsakis.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=76"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}